type: position_score
table:
  filename: ENCFF148PHO.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: DNase-seq_ENCSR582IPV
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'DNase-seq ENCSR582IPV [TISSUE: Homo sapiens lung tissue embryo (80 days)
    and male embryo (76 days)]'
  description: '**status**: released


    **biological\_replicates**: Rep 2


    **summary**: embryo (80 days) male embryo (76 days)


    **output\_type**: peaks


    **audit\_internal\_action**: Archived analysis {ENCAN199MUH|/analyses/ENCAN199MUH/}
    has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/}


    **audit\_not\_compliant**: Replicate concordance in DNase-seq experiments is measured
    by calculating the Pearson correlation between signal quantification of the replicates.
    ENCODE processed signal files {ENCFF830TGU|/files/ENCFF830TGU/}, {ENCFF629AAK|/files/ENCFF629AAK/}
    processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/})
    for GRCh38 assembly  have a Pearson correlation of 0.83. According to ENCODE standards,
    in an anisogenic assay a Pearson correlation value > 0.85 is recommended. (See
    {ENCODE DNase-seq data standards|/data-standards/dnase-seq/} )'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR582IPV
    status: released
    assay_term_name: DNase-seq
    simple_biosample_summary: male embryo (76 days) embryo (80 days)
    biosample_summary: Homo sapiens lung tissue embryo (80 days) and male embryo (76
      days)
    replication_type: anisogenic
    biosample_ontology: /biosample-types/tissue_UBERON_0002048/
    perturbed: false
    doi: 10.17989/ENCSR582IPV
    date_created: '2014-06-20T23:17:12.513532+00:00'
    date_released: '2016-09-22'
    submitter_comment: ''
