DNase-seq_ENCSR581LHW
DNase-seq ENCSR581LHW [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR581LHW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR581LHW [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF791PEK|/files/ENCFF791PEK/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR581LHW | float |
DNase-seq_ENCSR581LHW |
DNase-seq ENCSR581LHW [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"]
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[0.0238, 11.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF360YQN.bed.gz | 2.68 MB | 3cb70c6d3448029790a1eebf77d72cdc |
| ENCFF360YQN.bed.gz.dvc | 101.0 B | cc928f360f73214ce2572cc503fa1c2f |
| ENCFF360YQN.tabix.bed.gz | 2.54 MB | a9850f4243cda5bb82667140cc4e6441 |
| ENCFF360YQN.tabix.bed.gz.dvc | 107.0 B | c42c11f645140cd7f496b36020a96e71 |
| ENCFF360YQN.tabix.bed.gz.tbi | 346.14 KB | d79af596a0495324ec4215cf124d9999 |
| ENCFF360YQN.tabix.bed.gz.tbi.dvc | 110.0 B | 9bf21b930e2ca83306671c7796e36cd7 |
| genomic_resource.yaml | 2.25 KB | 5d6b5dcde2e6d6c3a3daf4aa0d400e00 |
| genomic_resource_original.yaml | 2.1 KB | c773c488ad1b70b9d9ea07e712ba481a |
| statistics/ |