DNase-seq_ENCSR580OAH
DNase-seq ENCSR580OAH [biosample_summary="Homo sapiens renal pelvis tissue male embryo (91 days)"]
×
| Id: | DNase-seq/ENCSR580OAH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR580OAH [biosample_summary="Homo sapiens renal pelvis tissue male embryo (91 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (91 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN466EWJ|/analyses/ENCAN466EWJ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF115XKL|/files/ENCFF115XKL/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 38345560 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF451NJI|/files/ENCFF451NJI/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 38023425 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR580OAH | float |
DNase-seq_ENCSR580OAH |
DNase-seq ENCSR580OAH [biosample_summary="Homo sapiens renal pelvis tissue male embryo (91 days)"]
|
|
[3, 1.05e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF280ELK.bed.gz | 971.26 KB | a8566a25148d8972de45d027c38ae60d |
| ENCFF280ELK.bed.gz.dvc | 100.0 B | fcad92a207af85bb8baac64a86aabd68 |
| ENCFF280ELK.tabix.bed.gz | 834.8 KB | 2abdec08269153b0e74b5be8e295fbd2 |
| ENCFF280ELK.tabix.bed.gz.dvc | 106.0 B | f4e3944d155d234f29287b0233ac8ecd |
| ENCFF280ELK.tabix.bed.gz.tbi | 462.41 KB | 7f4180d8d69f197b3fef1de0f10124e1 |
| ENCFF280ELK.tabix.bed.gz.tbi.dvc | 110.0 B | 28b6b3a5b738e32f283d6caf157bb6c4 |
| genomic_resource.yaml | 2.59 KB | 80e0e23284e120763f1448aa660385c2 |
| genomic_resource_original.yaml | 2.49 KB | 3d468a80c36662a6f30edb13401a4a28 |
| statistics/ |