DNase-seq_ENCSR579RVI
DNase-seq ENCSR579RVI [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR579RVI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR579RVI [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF391NWO|/files/ENCFF391NWO/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR579RVI | float |
DNase-seq_ENCSR579RVI |
DNase-seq ENCSR579RVI [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"]
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[0.0463, 10] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF145VKP.bed.gz | 1021.05 KB | b5b9096f8d5559b7f6d2b674487c21d5 |
| ENCFF145VKP.bed.gz.dvc | 101.0 B | 96558c3746c13dc3bed22a168afbb818 |
| ENCFF145VKP.tabix.bed.gz | 940.79 KB | 9e2b98637a9262b86df0cbd1f8a00764 |
| ENCFF145VKP.tabix.bed.gz.dvc | 106.0 B | 803045959042af44d818efdf17ae6cd4 |
| ENCFF145VKP.tabix.bed.gz.tbi | 253.8 KB | 8363fda491edea7be4aed5a63ec0f788 |
| ENCFF145VKP.tabix.bed.gz.tbi.dvc | 110.0 B | ccb414e273e5649e6c3711455eeb0dec |
| genomic_resource.yaml | 2.25 KB | 49f3d0964e4c1f12c7458e8ba8646610 |
| genomic_resource_original.yaml | 2.1 KB | 232c2cfef94ab38cc01edcf6d627cc31 |
| statistics/ |