DNase-seq_ENCSR579KDC
DNase-seq ENCSR579KDC [biosample_summary="Homo sapiens lower leg skin tissue female adult (53 years)"]
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| Id: | DNase-seq/ENCSR579KDC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR579KDC [biosample_summary="Homo sapiens lower leg skin tissue female adult (53 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF449PFL|/files/ENCFF449PFL/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR579KDC | float |
DNase-seq_ENCSR579KDC |
DNase-seq ENCSR579KDC [biosample_summary="Homo sapiens lower leg skin tissue female adult (53 years)"]
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[0.0227, 11.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF669VJK.bed.gz | 3.23 MB | 75a124bf44e02e19e81a209c5ac0d631 |
| ENCFF669VJK.bed.gz.dvc | 101.0 B | 44dbd6651ea39e56c368195e8d8c985d |
| ENCFF669VJK.tabix.bed.gz | 3.07 MB | 5eedc676156300741da5724e9287ca1d |
| ENCFF669VJK.tabix.bed.gz.dvc | 107.0 B | 9a19d54eda7f4df9a4e6225d2b738f56 |
| ENCFF669VJK.tabix.bed.gz.tbi | 333.04 KB | e5231d6f2205ec3a33ad1ca4d4933bc3 |
| ENCFF669VJK.tabix.bed.gz.tbi.dvc | 110.0 B | ddbec0a86c9b5725add4de65dda4a714 |
| genomic_resource.yaml | 2.05 KB | 6433820ae46c480230daf30164fb08b4 |
| genomic_resource_original.yaml | 1.95 KB | e5328dc792a710f915b5328e8c293459 |
| statistics/ |