| Id: | DNase-seq/ENCSR579DBA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR579DBA [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-2 for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-2 for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF373ODF|/files/ENCFF373ODF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30897496 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR579DBA | float |
DNase-seq_ENCSR579DBA |
DNase-seq ENCSR579DBA [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-2 for 4 hours"]
|
 |
[0.324, 68.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF770XME.bed.gz | 505.63 KB | 04a39dc4213771f16d5d8eec580dbf7f |
| ENCFF770XME.bed.gz.dvc | 100.0 B | a411684e78d1b6ad4366db61a1a7abec |
| ENCFF770XME.tabix.bed.gz | 456.82 KB | c67c82d27e2acaa4e169b63311d7d5d0 |
| ENCFF770XME.tabix.bed.gz.dvc | 106.0 B | 0c9fe5ab50ffbc0132479512a0a91a1c |
| ENCFF770XME.tabix.bed.gz.tbi | 230.05 KB | 4bdd93cc67fdf811ae371bf24729b52f |
| ENCFF770XME.tabix.bed.gz.tbi.dvc | 110.0 B | 5b2d691b4b20c2db1fdc0e4a18d1fdef |
| genomic_resource.yaml | 2.43 KB | 1e71e34490ca6f6185d8af4f25d29e1f |
| genomic_resource_original.yaml | 2.21 KB | 2e3a88fbbc77280742030f9789c97305 |
| statistics/ |