DNase-seq_ENCSR577QZP
DNase-seq ENCSR577QZP [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"]
×
| Id: | DNase-seq/ENCSR577QZP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR577QZP [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF032RAK|/files/ENCFF032RAK/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR577QZP | float |
DNase-seq_ENCSR577QZP |
DNase-seq ENCSR577QZP [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"]
|
|
[0.0781, 11.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF189OSV.bed.gz | 692.47 KB | 6851a373fa323d90435eda576f9dc2e5 |
| ENCFF189OSV.bed.gz.dvc | 100.0 B | 927f5be3d5a28c4c4fc99e61cfa65855 |
| ENCFF189OSV.tabix.bed.gz | 628.78 KB | e2509f1f2e82a0d5e95722ba65213d71 |
| ENCFF189OSV.tabix.bed.gz.dvc | 106.0 B | 726e1c8e25f626ca6fab2a3caf884e54 |
| ENCFF189OSV.tabix.bed.gz.tbi | 219.38 KB | 734119abc55b5447ef1ad2b0011a8e66 |
| ENCFF189OSV.tabix.bed.gz.tbi.dvc | 110.0 B | 6d5177c83e8f9bda837a3a63b4ab0337 |
| genomic_resource.yaml | 2.25 KB | 7b4417dc516cfaa2820fc30a18ff236b |
| genomic_resource_original.yaml | 2.1 KB | 7c919dad3e9e8cfd2575a4d631852c29 |
| statistics/ |