DNase-seq_ENCSR571CJM
DNase-seq ENCSR571CJM [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (87 years)"]
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| Id: | DNase-seq/ENCSR571CJM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR571CJM [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (87 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (87 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF902LXF|/files/ENCFF902LXF/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR571CJM | float |
DNase-seq_ENCSR571CJM |
DNase-seq ENCSR571CJM [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (87 years)"]
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[0.0324, 13] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF079GMX.bed.gz | 953.99 KB | 7ab3f37bcb0f3afc0be0ed1679942d14 |
| ENCFF079GMX.bed.gz.dvc | 100.0 B | 3f2114d29336b47c3bacb4f9a4e29fbf |
| ENCFF079GMX.tabix.bed.gz | 875.79 KB | 706ebf4dc3293f4482c28e35b0b26419 |
| ENCFF079GMX.tabix.bed.gz.dvc | 106.0 B | a7090cde8b1cd108636b0ffaae5ca2f4 |
| ENCFF079GMX.tabix.bed.gz.tbi | 317.06 KB | fb13fdec0c9d9ca97383d59ef1db502e |
| ENCFF079GMX.tabix.bed.gz.tbi.dvc | 110.0 B | 1176390b7d572189b66dc9c8e36604b2 |
| genomic_resource.yaml | 2.09 KB | 3e4aaa9d84c7d81408d1e0012604795d |
| genomic_resource_original.yaml | 1.97 KB | 230f926fa6bf167cd057ede55a9b9a24 |
| statistics/ |