Resource

Id DNase-seq/ENCSR570BWWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR570BWW [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (89 years)"]
Description
Labels
  • accession: ENCSR570BWW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years)
  • date_created: 2020-12-10T18:27:51.741879+00:00
  • date_released: 2021-01-11
  • doi: 10.17989/ENCSR570BWW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (89 years) with Alzheimer's disease
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR570BWW float

DNase-seq_ENCSR570BWW
DNase-seq ENCSR570BWW [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (89 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR570BWW [0.0545, 20.4]
n
20,828,145
mean
1.42
sd
1.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 208281450.65% 106862
chr1 1876490 0.75% 9667
chr2 1680680 0.69% 8658
chr3 1056346 0.53% 5421
chr4 790713 0.42% 3979
chr5 970660 0.53% 5013
chr6 809124 0.47% 4252
chr7 1119429 0.70% 5701
chr8 915796 0.63% 4644
chr9 1022647 0.74% 5159
chr10 1175641 0.88% 5981
chr11 1355884 1.00% 6891
chr12 862696 0.65% 4512
chr13 363775 0.32% 1871
chr14 627349 0.59% 3247
chr15 653139 0.64% 3460
chr16 932295 1.03% 4804
chr17 1126228 1.35% 5822
chr18 313994 0.39% 1612
chr19 913957 1.56% 4640
chr20 668040 1.04% 3454
chr21 385034 0.82% 1925
chr22 783920 1.54% 3933
chrX 422240 0.27% 2199
chrY 2068 <0.01% 17
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 106862 1 1260 194.91 180
global segment-length histogram

Files

Filename Size md5
ENCFF100GSU.bed.gz 1.1 MB 55155a225bff45e8eaae440b3d3bf357
ENCFF100GSU.tabix.bed.gz 1.01 MB 4eb2dc8702273ec90c3ecb0611cb7b17
ENCFF100GSU.tabix.bed.gz.tbi 296.51 KB 9961ab526c169adc67d37506e5b4dbd8
genomic_resource.yaml 1.42 KB a48712c56ebe62d629ca2644ed783261
statistics/