Resource

Id DNase-seq/ENCSR566XSDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR566XSD [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (26 years) treated with Interleukin-1 beta for 1 hour"]
Description
Labels
  • accession: ENCSR566XSD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (26 years) treated with Interleukin-1 beta for 1 hour
  • date_created: 2021-11-18T17:43:07.928226+00:00
  • date_released: 2022-06-07
  • doi: 10.17989/ENCSR566XSD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (26 years) treated with Interleukin-1 beta for 1 hour
  • status: released
  • submitter_comment: This dataset includes replicates and files that were previously associated with dataset ENCSR314IOV.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR566XSD float

DNase-seq_ENCSR566XSD
DNase-seq ENCSR566XSD [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (26 years) treated with Interleukin-1 beta for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR566XSD [0.0545, 179]
n
15,052,149
mean
6.43
sd
14.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 150521490.47% 80790
chr1 1477054 0.59% 7937
chr2 1069501 0.44% 5802
chr3 829160 0.42% 4483
chr4 510165 0.27% 2761
chr5 672587 0.37% 3670
chr6 868173 0.51% 4637
chr7 692845 0.43% 3731
chr8 575535 0.40% 3137
chr9 620636 0.45% 3360
chr10 681171 0.51% 3677
chr11 779645 0.58% 4188
chr12 773754 0.58% 4163
chr13 285771 0.25% 1546
chr14 529670 0.49% 2835
chr15 489791 0.48% 2664
chr16 611068 0.68% 3259
chr17 903230 1.08% 4766
chr18 250740 0.31% 1388
chr19 991849 1.69% 5033
chr20 453789 0.70% 2460
chr21 189421 0.41% 1026
chr22 381591 0.75% 2042
chrX 414885 0.27% 2224
chrY 118 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 80790 1 800 186.31 180
global segment-length histogram

Files

Filename Size md5
ENCFF217DDB.bed.gz 917.12 KB 9d5d43b1cce162469e5bfa5b33c1b078
ENCFF217DDB.tabix.bed.gz 836.71 KB 3752b3e19ef09eeca758f74c2b16cd4e
ENCFF217DDB.tabix.bed.gz.tbi 315.29 KB cb9196733a60de51b499390fcea684e8
genomic_resource.yaml 1.59 KB 8ff0366fe483e5a6632a6c39a98213db
statistics/