| Id: | DNase-seq/ENCSR565RQI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR565RQI [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour output_type: peaks audit_error: Alignment file {ENCFF099GCR|/files/ENCFF099GCR/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 12771338 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR565RQI | float |
DNase-seq_ENCSR565RQI |
DNase-seq ENCSR565RQI [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour"]
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[0.629, 65.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF371IEL.bed.gz | 286.4 KB | 668960bd526bf1f493017208596fa215 |
| ENCFF371IEL.bed.gz.dvc | 100.0 B | cc1327ef9f3a5c189de686f4df2a58e8 |
| ENCFF371IEL.tabix.bed.gz | 255.62 KB | 5da9bb26992db8d4aad588d7ef94cfed |
| ENCFF371IEL.tabix.bed.gz.dvc | 106.0 B | bc70eff8230737db51cd797e8cf15a65 |
| ENCFF371IEL.tabix.bed.gz.tbi | 159.49 KB | 4cbb07f9db23c3b40fd6a79f113dfdf3 |
| ENCFF371IEL.tabix.bed.gz.tbi.dvc | 110.0 B | 91929f8febbb2fe5b0a3536e075196b2 |
| genomic_resource.yaml | 2.41 KB | b86f85d29e5551825f7ca50f6c050242 |
| genomic_resource_original.yaml | 2.19 KB | 71b5c9be849eea5c1dcd55fbdfe7d24f |
| statistics/ |