DNase-seq_ENCSR565EBN
DNase-seq ENCSR565EBN [biosample_summary="Homo sapiens small intestine tissue female embryo (98 days)"]
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| Id: | DNase-seq/ENCSR565EBN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR565EBN [biosample_summary="Homo sapiens small intestine tissue female embryo (98 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (98 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN889ODV|/analyses/ENCAN889ODV/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF026WFH|/files/ENCFF026WFH/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 34965176 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF038JSA|/files/ENCFF038JSA/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 34665819 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR565EBN | float |
DNase-seq_ENCSR565EBN |
DNase-seq ENCSR565EBN [biosample_summary="Homo sapiens small intestine tissue female embryo (98 days)"]
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[4, 1.97e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF720DUQ.bed.gz | 905.45 KB | e38db78d36498b4de551f99950aeeeba |
| ENCFF720DUQ.bed.gz.dvc | 100.0 B | a4d640d8a7b98e1394be703ed9f35c18 |
| ENCFF720DUQ.tabix.bed.gz | 776.76 KB | b53d73f10a95ab1449283e16a93898c9 |
| ENCFF720DUQ.tabix.bed.gz.dvc | 106.0 B | 6b13e2fb9dfede864c27322d64ec1295 |
| ENCFF720DUQ.tabix.bed.gz.tbi | 435.69 KB | 0b226143c3ae98dff0315933368e112e |
| ENCFF720DUQ.tabix.bed.gz.tbi.dvc | 110.0 B | f96abf1de053b40daaf38a31353ee780 |
| genomic_resource.yaml | 2.61 KB | f7882064626de8286f97c5915ba3ea28 |
| genomic_resource_original.yaml | 2.5 KB | 8f8c6fea6857a2b4b4c082bc3580ef3a |
| statistics/ |