Resource
| Id | DNase-seq/ENCSR565EBN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR565EBN [biosample_summary="Homo sapiens small intestine tissue female embryo (98 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (98 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN889ODV|/analyses/ENCAN889ODV/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF026WFH|/files/ENCFF026WFH/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 34965176 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF038JSA|/files/ENCFF038JSA/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 34665819 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR565EBN | float |
DNase-seq_ENCSR565EBN |
DNase-seq ENCSR565EBN [biosample_summary="Homo sapiens small intestine tissue female embryo (98 days)"]
|
 |
[4, 1.97e+03] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 13974988 | 0.43% | 92989 |
| chr1 | 1347623 | 0.54% | 8969 |
| chr2 | 1100270 | 0.45% | 7320 |
| chr3 | 904740 | 0.46% | 6022 |
| chr4 | 702698 | 0.37% | 4677 |
| chr5 | 736882 | 0.41% | 4899 |
| chr6 | 832540 | 0.49% | 5533 |
| chr7 | 718367 | 0.45% | 4778 |
| chr8 | 614400 | 0.42% | 4088 |
| chr9 | 589476 | 0.43% | 3924 |
| chr10 | 653917 | 0.49% | 4348 |
| chr11 | 736767 | 0.55% | 4905 |
| chr12 | 698213 | 0.52% | 4653 |
| chr13 | 349414 | 0.31% | 2323 |
| chr14 | 453882 | 0.42% | 3019 |
| chr15 | 440149 | 0.43% | 2929 |
| chr16 | 477829 | 0.53% | 3181 |
| chr17 | 608990 | 0.73% | 4054 |
| chr18 | 313050 | 0.39% | 2081 |
| chr19 | 515550 | 0.88% | 3433 |
| chr20 | 359470 | 0.56% | 2391 |
| chr21 | 162150 | 0.35% | 1077 |
| chr22 | 264600 | 0.52% | 1763 |
| chrX | 392961 | 0.25% | 2615 |
| chrY | 1050 | <0.01% | 7 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 92989 | 10 | 439 | 150.29 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF720DUQ.bed.gz | 905.45 KB | e38db78d36498b4de551f99950aeeeba |
| ENCFF720DUQ.tabix.bed.gz | 776.76 KB | b53d73f10a95ab1449283e16a93898c9 |
| ENCFF720DUQ.tabix.bed.gz.tbi | 435.69 KB | 0b226143c3ae98dff0315933368e112e |
| genomic_resource.yaml | 2.61 KB | f7882064626de8286f97c5915ba3ea28 |
| statistics/ |