DNase-seq_ENCSR564TUY
DNase-seq ENCSR564TUY [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male"]
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| Id: | DNase-seq/ENCSR564TUY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR564TUY [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male output_type: peaks audit_warning: Alignment file {ENCFF917PBO|/files/ENCFF917PBO/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 34425185 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF917PBO|/files/ENCFF917PBO/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR564TUY | float |
DNase-seq_ENCSR564TUY |
DNase-seq ENCSR564TUY [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male"]
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[0.263, 36.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF329LXI.bed.gz | 784.77 KB | 90d5a234a8343fdc42a0269ddfbe8870 |
| ENCFF329LXI.bed.gz.dvc | 100.0 B | c592578a526f1bc04f80dcae46c5914b |
| ENCFF329LXI.tabix.bed.gz | 703.66 KB | 3ead00c860cdd45862e1081b3a5c0fcb |
| ENCFF329LXI.tabix.bed.gz.dvc | 106.0 B | ed13fe340491f46f4b11a04a2f1fec4d |
| ENCFF329LXI.tabix.bed.gz.tbi | 378.13 KB | 7519a06914577f29fede7e05f103639d |
| ENCFF329LXI.tabix.bed.gz.tbi.dvc | 110.0 B | 97a3c8995cf6a318d9940b86fdf1cae6 |
| genomic_resource.yaml | 2.63 KB | 8feb39d861906ca3280b5456f69901ee |
| genomic_resource_original.yaml | 2.53 KB | d5ac2c313dd37719949b923913e0448f |
| statistics/ |