Resource

Id DNase-seq/ENCSR564JUYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR564JUY [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 6 days, kit ligand for 6 days, hydrocortisone succinate for 6 days, erythropoietin for 6 days"]
Description
Labels
  • accession: ENCSR564JUY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000837/
  • biosample_summary: Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 6 days, kit ligand for 6 days, hydrocortisone succinate for 6 days, erythropoietin for 6 days
  • date_created: 2015-03-30T19:36:48.765428+00:00
  • date_released: 2015-08-31
  • doi: 10.17989/ENCSR564JUY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (25 years) treated with interleukin-3 for 6 days, kit ligand for 6 days, hydrocortisone succinate for 6 days, erythropoietin for 6 days
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR564JUY float

DNase-seq_ENCSR564JUY
DNase-seq ENCSR564JUY [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 6 days, kit ligand for 6 days, hydrocortisone succinate for 6 days, erythropoietin for 6 days"]
 HISTOGRAM FOR DNase-seq_ENCSR564JUY [0.03, 26.8]
n
37,273,623
mean
1.72
sd
2.38

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 372736231.16% 204267
chr1 3547772 1.43% 19410
chr2 2943293 1.22% 16329
chr3 2490052 1.26% 13620
chr4 1689887 0.89% 9364
chr5 1932251 1.06% 10680
chr6 2255631 1.32% 12192
chr7 1880608 1.18% 10364
chr8 1598996 1.10% 8849
chr9 1534470 1.11% 8397
chr10 1685903 1.26% 9313
chr11 1841416 1.36% 10087
chr12 1905462 1.43% 10361
chr13 955116 0.84% 5320
chr14 1198405 1.12% 6573
chr15 1215148 1.19% 6692
chr16 1253133 1.39% 6821
chr17 1723288 2.07% 9231
chr18 763415 0.95% 4279
chr19 1502794 2.56% 7905
chr20 986897 1.53% 5412
chr21 442537 0.95% 2417
chr22 751642 1.48% 4077
chrX 1113404 0.71% 6231
chrY 62103 0.11% 343
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 204267 1 940 182.48 180
global segment-length histogram

Files

Filename Size md5
ENCFF100BSX.bed.gz 2.22 MB 92779426bf91f33427c94216a5a824f4
ENCFF100BSX.tabix.bed.gz 2.02 MB 286c4979db46041855e76cc0d5805c46
ENCFF100BSX.tabix.bed.gz.tbi 600.3 KB ac14e4f6b4d723583bc17199254cd01e
genomic_resource.yaml 1.87 KB 28d8d2b04defb3961293ebe84bde185c
statistics/