Resource
| Id | DNase-seq/ENCSR564FZH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR564FZH [biosample_summary="Homo sapiens prostate gland tissue male adult (37 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN445LWK|/analyses/ENCAN445LWK/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF532BLV|/files/ENCFF532BLV/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR564FZH | float |
DNase-seq_ENCSR564FZH |
DNase-seq ENCSR564FZH [biosample_summary="Homo sapiens prostate gland tissue male adult (37 years)"]
|
 |
[6, 4.78e+03] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 10976395 | 0.34% | 73045 |
| chr1 | 1047486 | 0.42% | 6969 |
| chr2 | 856048 | 0.35% | 5695 |
| chr3 | 717030 | 0.36% | 4763 |
| chr4 | 489616 | 0.26% | 3258 |
| chr5 | 560535 | 0.31% | 3729 |
| chr6 | 629203 | 0.37% | 4190 |
| chr7 | 549813 | 0.35% | 3659 |
| chr8 | 474952 | 0.33% | 3167 |
| chr9 | 489231 | 0.35% | 3252 |
| chr10 | 511485 | 0.38% | 3404 |
| chr11 | 559678 | 0.41% | 3729 |
| chr12 | 536275 | 0.40% | 3568 |
| chr13 | 258234 | 0.23% | 1716 |
| chr14 | 354582 | 0.33% | 2360 |
| chr15 | 374414 | 0.37% | 2490 |
| chr16 | 401219 | 0.44% | 2672 |
| chr17 | 527100 | 0.63% | 3509 |
| chr18 | 223392 | 0.28% | 1488 |
| chr19 | 448179 | 0.76% | 2979 |
| chr20 | 307049 | 0.48% | 2047 |
| chr21 | 137951 | 0.30% | 919 |
| chr22 | 228832 | 0.45% | 1525 |
| chrX | 274441 | 0.18% | 1826 |
| chrY | 19650 | 0.03% | 131 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 73045 | 16 | 449 | 150.27 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF791MJW.bed.gz | 720.64 KB | 5dc6cee2c505d434c3839dd4dd62a51e |
| ENCFF791MJW.tabix.bed.gz | 617.65 KB | a6c5b9a1a3d1327787a1260833ae2385 |
| ENCFF791MJW.tabix.bed.gz.tbi | 355.67 KB | cde5b53e2bec02300ec149785c4d0b4e |
| genomic_resource.yaml | 2.2 KB | ab04f510b4f61c7b7b70c290ae0e8e88 |
| statistics/ |