DNase-seq_ENCSR564FZH
DNase-seq ENCSR564FZH [biosample_summary="Homo sapiens prostate gland tissue male adult (37 years)"]
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| Id: | DNase-seq/ENCSR564FZH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR564FZH [biosample_summary="Homo sapiens prostate gland tissue male adult (37 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN445LWK|/analyses/ENCAN445LWK/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF532BLV|/files/ENCFF532BLV/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR564FZH | float |
DNase-seq_ENCSR564FZH |
DNase-seq ENCSR564FZH [biosample_summary="Homo sapiens prostate gland tissue male adult (37 years)"]
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[6, 4.78e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF791MJW.bed.gz | 720.64 KB | 5dc6cee2c505d434c3839dd4dd62a51e |
| ENCFF791MJW.bed.gz.dvc | 100.0 B | 7556a4e8743a6eaa40964d5f1f9ba5e0 |
| ENCFF791MJW.tabix.bed.gz | 617.65 KB | a6c5b9a1a3d1327787a1260833ae2385 |
| ENCFF791MJW.tabix.bed.gz.dvc | 106.0 B | 93403dbee97c8383ee28da9d441e6399 |
| ENCFF791MJW.tabix.bed.gz.tbi | 355.67 KB | cde5b53e2bec02300ec149785c4d0b4e |
| ENCFF791MJW.tabix.bed.gz.tbi.dvc | 110.0 B | 307274cfc7b09501635e0f00f0afe742 |
| genomic_resource.yaml | 2.2 KB | ab04f510b4f61c7b7b70c290ae0e8e88 |
| genomic_resource_original.yaml | 2.1 KB | a28d53ac101d25af7369c22529371a3c |
| statistics/ |