Resource

Id DNase-seq/ENCSR563HBGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR563HBG [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (90 or above years)"]
Description
Labels
  • accession: ENCSR563HBG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens head of caudate nucleus tissue female adult (90 or above years)
  • date_created: 2020-12-15T22:21:53.360032+00:00
  • date_released: 2021-01-11
  • doi: 10.17989/ENCSR563HBG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR563HBG float

DNase-seq_ENCSR563HBG
DNase-seq ENCSR563HBG [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (90 or above years)"]
 HISTOGRAM FOR DNase-seq_ENCSR563HBG [0.0731, 30.8]
n
17,197,216
mean
2.66
sd
3.17

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 171972160.53% 94166
chr1 1613012 0.65% 8795
chr2 1319798 0.54% 7306
chr3 982933 0.50% 5374
chr4 711760 0.37% 3899
chr5 811050 0.45% 4516
chr6 873046 0.51% 4765
chr7 858353 0.54% 4747
chr8 784344 0.54% 4369
chr9 755406 0.55% 4130
chr10 864673 0.65% 4760
chr11 994386 0.74% 5440
chr12 818689 0.61% 4462
chr13 366733 0.32% 2031
chr14 586443 0.55% 3204
chr15 569653 0.56% 3138
chr16 668028 0.74% 3661
chr17 873015 1.05% 4708
chr18 319968 0.40% 1793
chr19 833154 1.42% 4300
chr20 528060 0.82% 2912
chr21 206426 0.44% 1159
chr22 444810 0.88% 2430
chrX 413286 0.26% 2265
chrY 190 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 94166 1 860 182.63 180
global segment-length histogram

Files

Filename Size md5
ENCFF247GJR.bed.gz 1.02 MB bdf47337fc6571966163711ba3ec9c53
ENCFF247GJR.tabix.bed.gz 946.14 KB 3c625828c2461641539fa91e65d3db77
ENCFF247GJR.tabix.bed.gz.tbi 378.59 KB 438ebb13c8b46579695fd56a07206a35
genomic_resource.yaml 1.31 KB 8af80f9cabdad5583790876f1c473f09
statistics/