DNase-seq_ENCSR563CZB
DNase-seq ENCSR563CZB [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR563CZB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR563CZB [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF614LDP|/files/ENCFF614LDP/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR563CZB | float |
DNase-seq_ENCSR563CZB |
DNase-seq ENCSR563CZB [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"]
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[0.0669, 10.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF523TDQ.bed.gz | 815.78 KB | 8d7297b4ff5c3766b4695da9b38cdaba |
| ENCFF523TDQ.bed.gz.dvc | 100.0 B | d51364c87bc01128499e778fe5c3d253 |
| ENCFF523TDQ.tabix.bed.gz | 742.87 KB | 6ea72f422555e20f3ecad74d15d31eca |
| ENCFF523TDQ.tabix.bed.gz.dvc | 106.0 B | 9a2f3cf0b6029e463b333649150d3b67 |
| ENCFF523TDQ.tabix.bed.gz.tbi | 278.09 KB | 83a457821d8f4f7b9eb19f8f1cee4e1a |
| ENCFF523TDQ.tabix.bed.gz.tbi.dvc | 110.0 B | bc3a154fdd6184af142f469f6e4c3d24 |
| genomic_resource.yaml | 2.28 KB | c8f14a7dd56eeac0cd44a092bceb7b26 |
| genomic_resource_original.yaml | 2.13 KB | 8c11aaf17c7dfbd8a33ad4ad334659dc |
| statistics/ |