DNase-seq_ENCSR562FNN
DNase-seq ENCSR562FNN [biosample_summary="Homo sapiens liver tissue female embryo (101 days) and female embryo (113 days)"]
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| Id: | DNase-seq/ENCSR562FNN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR562FNN [biosample_summary="Homo sapiens liver tissue female embryo (101 days) and female embryo (113 days)"] |
| Description: |
status: archived biological_replicates: Rep 1 summary: female embryo (101 days) female embryo (113 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN581WCZ|/analyses/ENCAN581WCZ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF191SRN|/files/ENCFF191SRN/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF815OAG|/files/ENCFF815OAG/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR562FNN | float |
DNase-seq_ENCSR562FNN |
DNase-seq ENCSR562FNN [biosample_summary="Homo sapiens liver tissue female embryo (101 days) and female embryo (113 days)"]
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[1, 5.86e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF173YTQ.bed.gz | 2.29 MB | 43f79a810ad1c510302a58484fe134c6 |
| ENCFF173YTQ.bed.gz.dvc | 101.0 B | e4232dd0b123810b60a810804b699e25 |
| ENCFF173YTQ.tabix.bed.gz | 1.97 MB | 0324329e36888a97717606b967653575 |
| ENCFF173YTQ.tabix.bed.gz.dvc | 107.0 B | 79fec3d18f2808a9a240b1c0061f75f9 |
| ENCFF173YTQ.tabix.bed.gz.tbi | 435.82 KB | 16826bc5653c33e032d007a05a3957c4 |
| ENCFF173YTQ.tabix.bed.gz.tbi.dvc | 110.0 B | 7cb3c0a4541370a470f71c74b216a47b |
| genomic_resource.yaml | 3.13 KB | 091d185cbdd1265d7e6ca5f5dd5d2134 |
| genomic_resource_original.yaml | 3.0 KB | af4fdd0a48f421a4a134bab5ded0f4b8 |
| statistics/ |