Resource

Id DNase-seq/ENCSR561ZLYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR561ZLY [biosample_summary="Homo sapiens T-cell male adult (21 years)"]
Description
Labels
  • accession: ENCSR561ZLY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (21 years)
  • date_created: 2020-03-30T19:01:27.964324+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR561ZLY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (21 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR561ZLY float

DNase-seq_ENCSR561ZLY

DNase-seq ENCSR561ZLY [biosample_summary="Homo sapiens T-cell male adult (21 years)"]
HISTOGRAM FOR DNase-seq_ENCSR561ZLY [0.0551, 98.3]
n
12,414,290
mean
4.73
sd
9.03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 124142900.39% 63326
chr1 1210849 0.49% 6104
chr2 1016066 0.42% 5232
chr3 628689 0.32% 3184
chr4 412415 0.22% 2075
chr5 584566 0.32% 2964
chr6 669294 0.39% 3362
chr7 579656 0.36% 2967
chr8 466800 0.32% 2405
chr9 506474 0.37% 2630
chr10 642425 0.48% 3342
chr11 686557 0.51% 3542
chr12 553700 0.42% 2783
chr13 236934 0.21% 1208
chr14 460969 0.43% 2369
chr15 427118 0.42% 2204
chr16 462021 0.51% 2361
chr17 735666 0.88% 3710
chr18 202628 0.25% 1065
chr19 664292 1.13% 3268
chr20 357448 0.55% 1857
chr21 201999 0.43% 1044
chr22 377663 0.74% 1962
chrX 315081 0.20% 1612
chrY 14980 0.03% 76
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63326 1 1040 196.04 200
global segment-length histogram

Files

Filename Size md5
ENCFF039YOG.bed.gz 703.65 KB 2c3d1ff373774d518b4263861748986d
ENCFF039YOG.tabix.bed.gz 642.3 KB 51ac89a6c2f1f757dce83bb8c70b843c
ENCFF039YOG.tabix.bed.gz.tbi 235.37 KB 368599a2e0672e43809594dc9967c397
genomic_resource.yaml 1.18 KB 330d5b7b8942bfd6deb1853354e5173f
statistics/