DNase-seq_ENCSR560UTV
DNase-seq ENCSR560UTV [biosample_summary="Homo sapiens central memory CD8-positive, alpha-beta T cell male adult (33 years)"]
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| Id: | DNase-seq/ENCSR560UTV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR560UTV [biosample_summary="Homo sapiens central memory CD8-positive, alpha-beta T cell male adult (33 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (33 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF275CHT|/files/ENCFF275CHT/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR560UTV | float |
DNase-seq_ENCSR560UTV |
DNase-seq ENCSR560UTV [biosample_summary="Homo sapiens central memory CD8-positive, alpha-beta T cell male adult (33 years)"]
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[0.0988, 19.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF839MRK.bed.gz | 399.07 KB | f6e38ef8564b7dcfe0b90b3e4d643afc |
| ENCFF839MRK.bed.gz.dvc | 100.0 B | 6046b3c42e361cdedca350050f164687 |
| ENCFF839MRK.tabix.bed.gz | 368.58 KB | 08603a358b8c65b13c2eeb3cf15a6cac |
| ENCFF839MRK.tabix.bed.gz.dvc | 106.0 B | f21a4b1dcc4fde7b8cf0d756443e3396 |
| ENCFF839MRK.tabix.bed.gz.tbi | 177.45 KB | b31f29debf96c5c50e97088dfc07f355 |
| ENCFF839MRK.tabix.bed.gz.tbi.dvc | 110.0 B | 038dd1981a94993b53d488ec256b898e |
| genomic_resource.yaml | 2.11 KB | 9f6f5042e8abb10706317445fab22f05 |
| genomic_resource_original.yaml | 1.99 KB | 52c63c111a0e481c39cc95dca74e9e9a |
| statistics/ |