DNase-seq_ENCSR560MXA
DNase-seq ENCSR560MXA [biosample_summary="Homo sapiens T-cell female adult (21 years)"]
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| Id: | DNase-seq/ENCSR560MXA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR560MXA [biosample_summary="Homo sapiens T-cell female adult (21 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (21 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF633EYK|/files/ENCFF633EYK/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR560MXA | float |
DNase-seq_ENCSR560MXA |
DNase-seq ENCSR560MXA [biosample_summary="Homo sapiens T-cell female adult (21 years)"]
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[0.131, 24.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF402BMP.bed.gz | 430.41 KB | c63d7e381c9f2020e66a88bbf1bb37ff |
| ENCFF402BMP.bed.gz.dvc | 100.0 B | 20d4b62acc09e483933938461d344fd5 |
| ENCFF402BMP.tabix.bed.gz | 395.53 KB | 77f97b9b2f96529904891649b27e3eea |
| ENCFF402BMP.tabix.bed.gz.dvc | 106.0 B | 6775c753ff7942d3172e545a08d0e07b |
| ENCFF402BMP.tabix.bed.gz.tbi | 200.16 KB | 024476f6d49b85554616cd46f6ab1f57 |
| ENCFF402BMP.tabix.bed.gz.tbi.dvc | 110.0 B | bdbfcb2ff5beacd6e5da8f5588987c8a |
| genomic_resource.yaml | 2.0 KB | 7cd0d54ebd18a0e2be0c4283a2721cbd |
| genomic_resource_original.yaml | 1.91 KB | 902339412fd15ac1701bbe40355ac579 |
| statistics/ |