Resource

Id DNase-seq/ENCSR560MXAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR560MXA [biosample_summary="Homo sapiens T-cell female adult (21 years)"]
Description
Labels
  • accession: ENCSR560MXA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (21 years)
  • date_created: 2021-11-04T02:59:52.385502+00:00
  • date_released: 2022-01-26
  • doi: 10.17989/ENCSR560MXA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (21 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR560MXA float

DNase-seq_ENCSR560MXA
DNase-seq ENCSR560MXA [biosample_summary="Homo sapiens T-cell female adult (21 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR560MXA [0.131, 24.4]
n
8,186,475
mean
2.65
sd
2.28

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 81864750.25% 39165
chr1 851785 0.34% 4034
chr2 564880 0.23% 2724
chr3 448152 0.23% 2160
chr4 294335 0.15% 1381
chr5 370151 0.20% 1765
chr6 487929 0.29% 2282
chr7 384072 0.24% 1863
chr8 291333 0.20% 1429
chr9 322564 0.23% 1533
chr10 354081 0.26% 1695
chr11 424345 0.31% 2025
chr12 419894 0.32% 2007
chr13 172862 0.15% 814
chr14 294007 0.27% 1383
chr15 262961 0.26% 1273
chr16 321953 0.36% 1557
chr17 492318 0.59% 2357
chr18 131667 0.16% 635
chr19 552110 0.94% 2576
chr20 226921 0.35% 1104
chr21 96112 0.21% 472
chr22 186224 0.37% 929
chrX 235819 0.15% 1167
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39165 3 973 209.03 200
global segment-length histogram

Files

Filename Size md5
ENCFF402BMP.bed.gz 430.41 KB c63d7e381c9f2020e66a88bbf1bb37ff
ENCFF402BMP.tabix.bed.gz 395.53 KB 77f97b9b2f96529904891649b27e3eea
ENCFF402BMP.tabix.bed.gz.tbi 200.16 KB 024476f6d49b85554616cd46f6ab1f57
genomic_resource.yaml 2.0 KB 7cd0d54ebd18a0e2be0c4283a2721cbd
statistics/