Resource

Id DNase-seq/ENCSR559WMKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR559WMK [biosample_summary="Homo sapiens tongue tissue male embryo (72 days)"]
Description
Labels
  • accession: ENCSR559WMK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001723/
  • biosample_summary: Homo sapiens tongue tissue male embryo (72 days)
  • date_created: 2014-06-20T23:49:25.685732+00:00
  • date_released: 2015-08-31
  • doi: 10.17989/ENCSR559WMK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (72 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR559WMK float

DNase-seq_ENCSR559WMK

DNase-seq ENCSR559WMK [biosample_summary="Homo sapiens tongue tissue male embryo (72 days)"]
HISTOGRAM FOR DNase-seq_ENCSR559WMK [0.027, 19.6]
n
48,342,161
mean
1.07
sd
1.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 483421611.50% 229834
chr1 4310490 1.73% 20280
chr2 3992893 1.65% 19090
chr3 3076630 1.55% 14640
chr4 2533085 1.33% 12013
chr5 2679347 1.48% 12671
chr6 2905971 1.70% 13671
chr7 2484361 1.56% 11892
chr8 2276885 1.57% 10858
chr9 2122762 1.53% 10053
chr10 2528260 1.89% 11891
chr11 2432075 1.80% 11596
chr12 2340719 1.76% 11081
chr13 1397667 1.22% 6665
chr14 1566062 1.46% 7393
chr15 1577316 1.55% 7453
chr16 1506049 1.67% 7254
chr17 1936743 2.33% 9278
chr18 1116846 1.39% 5313
chr19 1370085 2.34% 6454
chr20 1276905 1.98% 6133
chr21 595616 1.28% 2823
chr22 848898 1.67% 4137
chrX 1416687 0.91% 6944
chrY 49809 0.09% 251
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 229834 1 1220 210.34 200
global segment-length histogram

Files

Filename Size md5
ENCFF352WTW.bed.gz 2.44 MB 1b796c7c953cad0ccc88a57a898a4f83
ENCFF352WTW.tabix.bed.gz 2.24 MB b8c45b2c6429519835712985542e32e0
ENCFF352WTW.tabix.bed.gz.tbi 697.69 KB aa343614a2b2d5d789fc4dfc340b5aec
genomic_resource.yaml 1.2 KB e918cc44592844432c7a72b135e09aa4
statistics/