Resource

Id DNase-seq/ENCSR559QCMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR559QCM [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)"]
Description
Labels
  • accession: ENCSR559QCM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000625/
  • biosample_summary: Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)
  • date_created: 2020-04-20T23:45:24.922182+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR559QCM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR559QCM float

DNase-seq_ENCSR559QCM
DNase-seq ENCSR559QCM [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR559QCM [0.055, 43.1]
n
13,041,182
mean
3.55
sd
4.68

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 130411820.41% 66998
chr1 1283555 0.52% 6525
chr2 976182 0.40% 5065
chr3 689685 0.35% 3545
chr4 424943 0.22% 2198
chr5 580991 0.32% 2952
chr6 703805 0.41% 3601
chr7 602812 0.38% 3125
chr8 477287 0.33% 2509
chr9 520793 0.38% 2674
chr10 631565 0.47% 3263
chr11 698107 0.52% 3617
chr12 627455 0.47% 3207
chr13 247904 0.22% 1264
chr14 488948 0.46% 2513
chr15 452071 0.44% 2335
chr16 515360 0.57% 2618
chr17 785800 0.94% 3982
chr18 216850 0.27% 1129
chr19 800707 1.37% 4007
chr20 399028 0.62% 2092
chr21 171118 0.37% 884
chr22 351821 0.69% 1849
chrX 380183 0.24% 1967
chrY 14212 0.02% 77
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 66998 3 840 194.65 180
global segment-length histogram

Files

Filename Size md5
ENCFF364TIK.bed.gz 747.04 KB 79a52de8bd07b80c493d1f5ee9c5b756
ENCFF364TIK.tabix.bed.gz 684.88 KB 8a918c6e52e5d3554ef21cc2ce62901c
ENCFF364TIK.tabix.bed.gz.tbi 258.04 KB f26230a2466f597c7168d238e928c009
genomic_resource.yaml 1.26 KB 41bd5463a13e2e8dee5a4b0a365371c8
statistics/