Resource

Id DNase-seq/ENCSR558SUTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR558SUT [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (82 years)"]
Description
Labels
  • accession: ENCSR558SUT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens head of caudate nucleus tissue male adult (82 years)
  • date_created: 2020-12-15T22:21:53.962381+00:00
  • date_released: 2021-01-11
  • doi: 10.17989/ENCSR558SUT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (82 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR558SUT float

DNase-seq_ENCSR558SUT

DNase-seq ENCSR558SUT [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (82 years)"]
HISTOGRAM FOR DNase-seq_ENCSR558SUT [0.0799, 34.6]
n
13,677,764
mean
3.07
sd
3.49

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 136777640.43% 73871
chr1 1310367 0.53% 7002
chr2 1008712 0.42% 5506
chr3 756671 0.38% 4037
chr4 543212 0.29% 2900
chr5 675755 0.37% 3658
chr6 678872 0.40% 3654
chr7 657628 0.41% 3611
chr8 558421 0.38% 3020
chr9 592649 0.43% 3214
chr10 689989 0.52% 3759
chr11 766586 0.57% 4162
chr12 636428 0.48% 3409
chr13 271183 0.24% 1468
chr14 422965 0.40% 2303
chr15 468333 0.46% 2528
chr16 517946 0.57% 2840
chr17 742070 0.89% 3982
chr18 283412 0.35% 1535
chr19 758062 1.29% 3934
chr20 444521 0.69% 2471
chr21 162658 0.35% 911
chr22 364031 0.72% 1975
chrX 354229 0.23% 1918
chrY 13064 0.02% 74
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 73871 1 900 185.16 180
global segment-length histogram

Files

Filename Size md5
ENCFF406DHI.bed.gz 820.94 KB 8b474e9a5e57927f0bc9ceb8e1c5c4b1
ENCFF406DHI.tabix.bed.gz 746.63 KB 93120abe943c0947a4ad3b51688d7401
ENCFF406DHI.tabix.bed.gz.tbi 307.31 KB 41622ee0b491636ef00cb8b007d69606
genomic_resource.yaml 1.25 KB 9372a2d7fb2766ab885ddc7b797db02f
statistics/