DNase-seq_ENCSR556ARS
DNase-seq ENCSR556ARS [biosample_summary="Homo sapiens central memory CD4-positive, alpha-beta T cell male adult (42 years)"]
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| Id: | DNase-seq/ENCSR556ARS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR556ARS [biosample_summary="Homo sapiens central memory CD4-positive, alpha-beta T cell male adult (42 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) output_type: peaks audit_warning: Alignment file {ENCFF386FCB|/files/ENCFF386FCB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 42663662 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR556ARS | float |
DNase-seq_ENCSR556ARS |
DNase-seq ENCSR556ARS [biosample_summary="Homo sapiens central memory CD4-positive, alpha-beta T cell male adult (42 years)"]
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[0.259, 45.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF404RWR.bed.gz | 404.85 KB | 4957f892ffc2f7d3a6e57382fbf1edb7 |
| ENCFF404RWR.bed.gz.dvc | 100.0 B | 0dcefe6e15bd2f8993f0343fef53dba8 |
| ENCFF404RWR.tabix.bed.gz | 368.99 KB | 307b7521c5c43b8a836af19ef8d45e2c |
| ENCFF404RWR.tabix.bed.gz.dvc | 106.0 B | ed1f416bdfd7fd79c79032796a90f993 |
| ENCFF404RWR.tabix.bed.gz.tbi | 194.3 KB | c0407bc3cd0b2357e5ea5463052ae1eb |
| ENCFF404RWR.tabix.bed.gz.tbi.dvc | 110.0 B | 33c4e1da4c5f652f4947b253be268a22 |
| genomic_resource.yaml | 1.92 KB | d2129828d892034ece41ca071d0c984a |
| genomic_resource_original.yaml | 1.79 KB | b271ad61f8ce5f3b468abb6d47df6cfa |
| statistics/ |