Resource

Id DNase-seq/ENCSR555TFEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR555TFE [biosample_summary="Homo sapiens fibroblast of skin of left quadriceps male embryo (97 days)"]
Description
Labels
  • accession: ENCSR555TFE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000522/
  • biosample_summary: Homo sapiens fibroblast of skin of left quadriceps male embryo (97 days)
  • date_created: 2015-09-16T21:42:12.356137+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR555TFE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (97 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR555TFE float

DNase-seq_ENCSR555TFE
DNase-seq ENCSR555TFE [biosample_summary="Homo sapiens fibroblast of skin of left quadriceps male embryo (97 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR555TFE [0.148, 44]
n
19,708,782
mean
3.61
sd
4.08

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 197087820.61% 105310
chr1 1780506 0.72% 9616
chr2 1673511 0.69% 8977
chr3 1390988 0.70% 7426
chr4 1116386 0.59% 5988
chr5 1207345 0.67% 6389
chr6 1278182 0.75% 6787
chr7 984652 0.62% 5305
chr8 959128 0.66% 5104
chr9 855984 0.62% 4537
chr10 935397 0.70% 4939
chr11 973761 0.72% 5197
chr12 987125 0.74% 5273
chr13 583040 0.51% 3122
chr14 602195 0.56% 3210
chr15 654125 0.64% 3469
chr16 551048 0.61% 2951
chr17 693931 0.83% 3739
chr18 481506 0.60% 2612
chr19 519569 0.89% 2702
chr20 471293 0.73% 2525
chr21 237868 0.51% 1272
chr22 263863 0.52% 1439
chrX 485139 0.31% 2618
chrY 22240 0.04% 113
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 105310 2 780 187.15 180
global segment-length histogram

Files

Filename Size md5
ENCFF450KKX.bed.gz 1.11 MB 3e6eaf529c6d774d85a651512218aa98
ENCFF450KKX.tabix.bed.gz 1020.5 KB f3be5291b2d62aec2e7f6cefd663dbd9
ENCFF450KKX.tabix.bed.gz.tbi 490.52 KB 68e716a90309b6541ed283b1ca30f2ac
genomic_resource.yaml 1.89 KB 503155241d9d17b496bcff3bcf868641
statistics/