| Id: | DNase-seq/ENCSR555TFE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR555TFE [biosample_summary="Homo sapiens fibroblast of skin of left quadriceps male embryo (97 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (97 days) output_type: peaks audit_warning: Alignment file {ENCFF516IJI|/files/ENCFF516IJI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 40833343 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR555TFE | float |
DNase-seq_ENCSR555TFE |
DNase-seq ENCSR555TFE [biosample_summary="Homo sapiens fibroblast of skin of left quadriceps male embryo (97 days)"]
|
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[0.148, 44] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF450KKX.bed.gz | 1.11 MB | 3e6eaf529c6d774d85a651512218aa98 |
| ENCFF450KKX.bed.gz.dvc | 101.0 B | c914a70c2b7734daf65a3d990eb58b8f |
| ENCFF450KKX.tabix.bed.gz | 1020.5 KB | f3be5291b2d62aec2e7f6cefd663dbd9 |
| ENCFF450KKX.tabix.bed.gz.dvc | 107.0 B | 0d3aeda73844b334f2d5245300bb121d |
| ENCFF450KKX.tabix.bed.gz.tbi | 490.52 KB | 68e716a90309b6541ed283b1ca30f2ac |
| ENCFF450KKX.tabix.bed.gz.tbi.dvc | 110.0 B | 9706543a6d4c88260e85121131e34fbe |
| genomic_resource.yaml | 1.89 KB | 503155241d9d17b496bcff3bcf868641 |
| genomic_resource_original.yaml | 1.77 KB | 7decbf8115a9466cdced69985981d1c7 |
| statistics/ |