DNase-seq_ENCSR555DLG
DNase-seq ENCSR555DLG [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue male adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR555DLG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR555DLG [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue male adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF960LMQ|/files/ENCFF960LMQ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR555DLG | float |
DNase-seq_ENCSR555DLG |
DNase-seq ENCSR555DLG [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue male adult (90 or above years)"]
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[0.232, 13.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF254AUY.bed.gz | 243.04 KB | cd38b40c6b201976e5f00a53f4177a52 |
| ENCFF254AUY.bed.gz.dvc | 100.0 B | 60340cf507c458860c8c11ee66cb73a6 |
| ENCFF254AUY.tabix.bed.gz | 218.48 KB | b604cb3a7acfb7db1d44e40468d08c8b |
| ENCFF254AUY.tabix.bed.gz.dvc | 106.0 B | a57e166e1e9f043468c7dff8c77535e1 |
| ENCFF254AUY.tabix.bed.gz.tbi | 140.92 KB | a5ac7c72fc979867a40b973b8b81faa0 |
| ENCFF254AUY.tabix.bed.gz.tbi.dvc | 110.0 B | ed99f716e3a2bdc21ed2b7f18d4946ee |
| genomic_resource.yaml | 2.25 KB | 6dba7d4a3c491942d436b72c9e3e77b7 |
| genomic_resource_original.yaml | 2.09 KB | 1670e76ec16978b3c4a6abc172ae3f81 |
| statistics/ |