DNase-seq_ENCSR552RKI
DNase-seq ENCSR552RKI [biosample_summary="Homo sapiens placenta tissue embryo (102 days)"]
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| Id: | DNase-seq/ENCSR552RKI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR552RKI [biosample_summary="Homo sapiens placenta tissue embryo (102 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: embryo (102 days) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF446RVL|/files/ENCFF446RVL/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR552RKI | float |
DNase-seq_ENCSR552RKI |
DNase-seq ENCSR552RKI [biosample_summary="Homo sapiens placenta tissue embryo (102 days)"]
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[0.0295, 12.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF734VSF.bed.gz | 1.19 MB | 721aae4ffe7d1e25dc2feef08ff47a22 |
| ENCFF734VSF.bed.gz.dvc | 101.0 B | 4bea5ea196d5ea5e5a9c145a7454457d |
| ENCFF734VSF.tabix.bed.gz | 1.09 MB | 69805e603077d922b2624251cd20e966 |
| ENCFF734VSF.tabix.bed.gz.dvc | 107.0 B | b2c9646250b34cb720d56ef6fdf6cf18 |
| ENCFF734VSF.tabix.bed.gz.tbi | 355.6 KB | fe4a4d4d98ded577f25e7b8672b77438 |
| ENCFF734VSF.tabix.bed.gz.tbi.dvc | 110.0 B | c2893920d4c7914f47a0526916069f08 |
| genomic_resource.yaml | 2.0 KB | 8bc0b3226283f791370bed1b2e3fc4fc |
| genomic_resource_original.yaml | 1.91 KB | 7ed7a9a5a55f7492e659eaedeebad08f |
| statistics/ |