| Id: | DNase-seq/ENCSR551LAH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR551LAH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours output_type: peaks audit_warning: Alignment file {ENCFF342XYF|/files/ENCFF342XYF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 28919308 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR551LAH | float |
DNase-seq_ENCSR551LAH |
DNase-seq ENCSR551LAH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours"]
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 |
[0.381, 47.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF317LRK.bed.gz | 489.57 KB | 396376e0c2090c5c33839cd495a4d755 |
| ENCFF317LRK.bed.gz.dvc | 100.0 B | af5d0dd6a7936792ed3c40099db99129 |
| ENCFF317LRK.tabix.bed.gz | 442.02 KB | 47de642060ec38569a29359bdee3ee8f |
| ENCFF317LRK.tabix.bed.gz.dvc | 106.0 B | a2a6cc2beaa518f5536311aae4298f98 |
| ENCFF317LRK.tabix.bed.gz.tbi | 232.22 KB | 1d28ad7336bd8e15df072c3c0a33172b |
| ENCFF317LRK.tabix.bed.gz.tbi.dvc | 110.0 B | a351eb1fd199070c435bea0e1671080e |
| genomic_resource.yaml | 2.44 KB | 6ef77dc45b31a40b5845f76ad28a1fa6 |
| genomic_resource_original.yaml | 2.21 KB | 9e10b7da1bf9d3aa47a8772721ba8a9e |
| statistics/ |