DNase-seq_ENCSR549NRK
DNase-seq ENCSR549NRK [biosample_summary="Homo sapiens thyroid gland tissue male adult (54 years)"]
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| Id: | DNase-seq/ENCSR549NRK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR549NRK [biosample_summary="Homo sapiens thyroid gland tissue male adult (54 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN895HNZ|/analyses/ENCAN895HNZ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF400UAQ|/files/ENCFF400UAQ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL202DNS|/pipelines/ENCPL202DNS/} ) for GRCh38 assembly has 45525692 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR549NRK | float |
DNase-seq_ENCSR549NRK |
DNase-seq ENCSR549NRK [biosample_summary="Homo sapiens thyroid gland tissue male adult (54 years)"]
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[6, 2.93e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF515ZIO.bed.gz | 1.13 MB | b4f420caf6136fa6942e4d1bcf4399cc |
| ENCFF515ZIO.bed.gz.dvc | 101.0 B | 3ec4a1286d508e5dc759e59a7b75c86a |
| ENCFF515ZIO.tabix.bed.gz | 993.92 KB | 09ed1ef2282d2992bd3d511dea70d669 |
| ENCFF515ZIO.tabix.bed.gz.dvc | 107.0 B | 40a787c006695ecb1ab2f4d1585ccfce |
| ENCFF515ZIO.tabix.bed.gz.tbi | 466.27 KB | de09302862e4a3c94a7babd30df335fd |
| ENCFF515ZIO.tabix.bed.gz.tbi.dvc | 110.0 B | 1206bb718b4c270d492c1912e7b8985f |
| genomic_resource.yaml | 1.99 KB | ae8eabf8721adbf5191f5fb7af497509 |
| genomic_resource_original.yaml | 1.89 KB | 9d9e920ab4c42f34ee441cefb491d3b3 |
| statistics/ |