Resource

Id DNase-seq/ENCSR548MMDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR548MMD [biosample_summary="Homo sapiens EH"]
Description
Labels
  • accession: ENCSR548MMD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007748/
  • biosample_summary: Homo sapiens EH
  • date_created: 2014-10-01T04:44:28.322519+00:00
  • date_released: 2015-08-31
  • doi: 10.17989/ENCSR548MMD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR548MMD float

DNase-seq_ENCSR548MMD
DNase-seq ENCSR548MMD [biosample_summary="Homo sapiens EH"]
 HISTOGRAM FOR DNase-seq_ENCSR548MMD [0.0127, 47.7]
n
57,424,802
mean
1.91
sd
3.65

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 574248021.78% 294879
chr1 5302134 2.13% 27408
chr2 5016939 2.07% 25741
chr3 3981335 2.01% 20461
chr4 3055409 1.61% 15816
chr5 3349252 1.84% 17122
chr6 3625904 2.12% 18422
chr7 2831774 1.78% 14585
chr8 2810929 1.94% 14386
chr9 2437283 1.76% 12520
chr10 2787052 2.08% 14372
chr11 2836039 2.10% 14499
chr12 2932163 2.20% 15009
chr13 1536252 1.34% 7895
chr14 1707883 1.60% 8787
chr15 1955763 1.92% 9965
chr16 1632468 1.81% 8440
chr17 2231870 2.68% 11441
chr18 1283595 1.60% 6612
chr19 1472108 2.51% 7547
chr20 1405394 2.18% 7188
chr21 646329 1.38% 3295
chr22 900258 1.77% 4659
chrX 1598315 1.02% 8253
chrY 88354 0.15% 456
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 294879 1 1240 194.74 199
global segment-length histogram

Files

Filename Size md5
ENCFF628EXC.bed.gz 3.22 MB 8482014eec68574aa471373b062e857f
ENCFF628EXC.tabix.bed.gz 2.93 MB 7d62ba94a9d864111aae2ed40872439d
ENCFF628EXC.tabix.bed.gz.tbi 707.44 KB 893e53a04bf98d2131699dc6624a6996
genomic_resource.yaml 1.69 KB 2acd07ee76c141ba0a7b0977fe977335
statistics/