| Id: | DNase-seq/ENCSR548KXH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR548KXH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours output_type: peaks audit_warning: Alignment file {ENCFF329KNS|/files/ENCFF329KNS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 29169384 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR548KXH | float |
DNase-seq_ENCSR548KXH |
DNase-seq ENCSR548KXH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours"]
|
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[0.275, 39.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF943MCB.bed.gz | 446.58 KB | 0bc96e2fe3e6652b2fbac542256a217d |
| ENCFF943MCB.bed.gz.dvc | 100.0 B | ddac632b45723fbd3d7f21348d684959 |
| ENCFF943MCB.tabix.bed.gz | 403.69 KB | b36b76142072cd6db34f9618deb9adba |
| ENCFF943MCB.tabix.bed.gz.dvc | 106.0 B | 489148d1e705e3be83a0ae001b5213f7 |
| ENCFF943MCB.tabix.bed.gz.tbi | 213.85 KB | 16df2dc4e1aa51f3c1ad5aa16aed51d1 |
| ENCFF943MCB.tabix.bed.gz.tbi.dvc | 110.0 B | e12cc13c318a4a3d4dd2e5af68fa212a |
| genomic_resource.yaml | 2.65 KB | eb1f87a415be7a8a61ebd3d6c27244e8 |
| genomic_resource_original.yaml | 2.39 KB | 443e7a82feb2e6b937c7366e68f701ee |
| statistics/ |