DNase-seq_ENCSR545KQR
DNase-seq ENCSR545KQR [biosample_summary="Homo sapiens placenta tissue female embryo (105 days)"]
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| Id: | DNase-seq/ENCSR545KQR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR545KQR [biosample_summary="Homo sapiens placenta tissue female embryo (105 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (105 days) output_type: peaks audit_warning: Alignment file {ENCFF821JWU|/files/ENCFF821JWU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 44389309 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR545KQR | float |
DNase-seq_ENCSR545KQR |
DNase-seq ENCSR545KQR [biosample_summary="Homo sapiens placenta tissue female embryo (105 days)"]
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[0.136, 22.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF395GQF.bed.gz | 1.22 MB | ef8036b84f8d6be06d6f81d4d4dbf8f6 |
| ENCFF395GQF.bed.gz.dvc | 101.0 B | 98b8b8c58a1c0ef01523346897a935b2 |
| ENCFF395GQF.tabix.bed.gz | 1.09 MB | 3839c8df308e1cc92f96748f98c6c559 |
| ENCFF395GQF.tabix.bed.gz.dvc | 107.0 B | 82a1a969df78e493bc49c3ae9e0d8642 |
| ENCFF395GQF.tabix.bed.gz.tbi | 496.51 KB | f352e0ac06722453eb6908cda43302c3 |
| ENCFF395GQF.tabix.bed.gz.tbi.dvc | 110.0 B | ed27366aa97c43574953beac7537053f |
| genomic_resource.yaml | 1.83 KB | daf3e5aa51729431f9c9943637a4a5ac |
| genomic_resource_original.yaml | 1.73 KB | 62b14f56504d6d0e84c91e240f32e036 |
| statistics/ |