Resource

Id DNase-seq/ENCSR545KQRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR545KQR [biosample_summary="Homo sapiens placenta tissue female embryo (105 days)"]
Description
Labels
  • accession: ENCSR545KQR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue female embryo (105 days)
  • date_created: 2015-09-16T21:42:43.119178+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR545KQR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (105 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR545KQR float

DNase-seq_ENCSR545KQR
DNase-seq ENCSR545KQR [biosample_summary="Homo sapiens placenta tissue female embryo (105 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR545KQR [0.136, 22.8]
n
20,640,584
mean
2.83
sd
2.64

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 206405840.64% 116525
chr1 1984521 0.80% 11215
chr2 1662643 0.69% 9445
chr3 1440419 0.73% 8164
chr4 1043600 0.55% 5953
chr5 1164877 0.64% 6615
chr6 1322232 0.77% 7499
chr7 1114214 0.70% 6313
chr8 919186 0.63% 5206
chr9 879180 0.64% 4960
chr10 956590 0.71% 5416
chr11 1021269 0.76% 5775
chr12 1032493 0.77% 5801
chr13 507016 0.44% 2848
chr14 644117 0.60% 3628
chr15 652771 0.64% 3663
chr16 621766 0.69% 3472
chr17 784245 0.94% 4376
chr18 454636 0.57% 2583
chr19 719913 1.23% 3856
chr20 510441 0.79% 2869
chr21 237320 0.51% 1335
chr22 325203 0.64% 1840
chrX 596912 0.38% 3425
chrY 45020 0.08% 268
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 116525 3 880 177.13 180
global segment-length histogram

Files

Filename Size md5
ENCFF395GQF.bed.gz 1.22 MB ef8036b84f8d6be06d6f81d4d4dbf8f6
ENCFF395GQF.tabix.bed.gz 1.09 MB 3839c8df308e1cc92f96748f98c6c559
ENCFF395GQF.tabix.bed.gz.tbi 496.51 KB f352e0ac06722453eb6908cda43302c3
genomic_resource.yaml 1.83 KB daf3e5aa51729431f9c9943637a4a5ac
statistics/