Resource

Id DNase-seq/ENCSR543WNAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR543WNA [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours"]
Description
Labels
  • accession: ENCSR543WNA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours
  • date_created: 2020-04-19T18:36:54.165146+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR543WNA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR543WNA float

DNase-seq_ENCSR543WNA
DNase-seq ENCSR543WNA [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR543WNA [0.317, 27.6]
n
7,184,098
mean
4.57
sd
3.53

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 71840980.22% 34812
chr1 732236 0.29% 3549
chr2 494721 0.20% 2411
chr3 395840 0.20% 1904
chr4 255391 0.13% 1172
chr5 313746 0.17% 1503
chr6 410705 0.24% 1952
chr7 325085 0.20% 1584
chr8 267472 0.18% 1304
chr9 298577 0.22% 1446
chr10 313851 0.23% 1528
chr11 372330 0.28% 1839
chr12 380899 0.29% 1817
chr13 143562 0.13% 666
chr14 247130 0.23% 1186
chr15 237010 0.23% 1154
chr16 297474 0.33% 1438
chr17 438314 0.53% 2144
chr18 113791 0.14% 546
chr19 498490 0.85% 2412
chr20 197897 0.31% 1025
chr21 81390 0.17% 404
chr22 170150 0.33% 867
chrX 191360 0.12% 932
chrY 6677 0.01% 29
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 34812 1 800 206.37 200
global segment-length histogram

Files

Filename Size md5
ENCFF520NVH.bed.gz 370.39 KB 4b5acf6a48074ac8f24540b63f5da7a2
ENCFF520NVH.tabix.bed.gz 340.08 KB 01569b158a520fcc292f9ed03751d728
ENCFF520NVH.tabix.bed.gz.tbi 179.1 KB d87944273d880317e24589aa2e28d077
genomic_resource.yaml 2.41 KB 773c6a1977623bebb6f4ba4d8536f9eb
statistics/