| Id: | DNase-seq/ENCSR543WNA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR543WNA [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF393PFY|/files/ENCFF393PFY/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 31678010 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR543WNA | float |
DNase-seq_ENCSR543WNA |
DNase-seq ENCSR543WNA [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours"]
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[0.317, 27.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF520NVH.bed.gz | 370.39 KB | 4b5acf6a48074ac8f24540b63f5da7a2 |
| ENCFF520NVH.bed.gz.dvc | 100.0 B | 495dd53d7e422c3550577b46b7f63bd5 |
| ENCFF520NVH.tabix.bed.gz | 340.08 KB | 01569b158a520fcc292f9ed03751d728 |
| ENCFF520NVH.tabix.bed.gz.dvc | 106.0 B | 7d9cd0efcd2a17a881b457476b18cd8a |
| ENCFF520NVH.tabix.bed.gz.tbi | 179.1 KB | d87944273d880317e24589aa2e28d077 |
| ENCFF520NVH.tabix.bed.gz.tbi.dvc | 110.0 B | 5e9575def6b3dc10092d0a44340aadbf |
| genomic_resource.yaml | 2.41 KB | 773c6a1977623bebb6f4ba4d8536f9eb |
| genomic_resource_original.yaml | 2.19 KB | 47a405d0d279f6200c5dfc662cd6211f |
| statistics/ |