| Id: | DNase-seq/ENCSR541ZOU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR541ZOU [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF129MZG|/files/ENCFF129MZG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 42452762 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR541ZOU | float |
DNase-seq_ENCSR541ZOU |
DNase-seq ENCSR541ZOU [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours"]
|
 |
[0.307, 24.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF754ZLR.bed.gz | 495.27 KB | 936af78e0d3d3acd5938c21acd433804 |
| ENCFF754ZLR.bed.gz.dvc | 100.0 B | e3cde171a7c398c827b20c7a4b2586ef |
| ENCFF754ZLR.tabix.bed.gz | 449.44 KB | f8cd2adfccc8f083d191e22ae0d4a412 |
| ENCFF754ZLR.tabix.bed.gz.dvc | 106.0 B | fbab36063fe4381bcbcb95ba8e53d275 |
| ENCFF754ZLR.tabix.bed.gz.tbi | 233.67 KB | 125c6002978a533062b0e4f82cee2a4b |
| ENCFF754ZLR.tabix.bed.gz.tbi.dvc | 110.0 B | 1b96d0f6282c1499688cd9ceda31a9b9 |
| genomic_resource.yaml | 2.21 KB | ae9ba57b2ccc43aa6498c91aefb1c517 |
| genomic_resource_original.yaml | 2.04 KB | 1e05ee4da304297c88665e9267fbc5a2 |
| statistics/ |