DNase-seq_ENCSR541UPY
DNase-seq ENCSR541UPY [biosample_summary="Homo sapiens thymus tissue female embryo (98 days)"]
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| Id: | DNase-seq/ENCSR541UPY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR541UPY [biosample_summary="Homo sapiens thymus tissue female embryo (98 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (98 days) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF877BGY|/files/ENCFF877BGY/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR541UPY | float |
DNase-seq_ENCSR541UPY |
DNase-seq ENCSR541UPY [biosample_summary="Homo sapiens thymus tissue female embryo (98 days)"]
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[0.0872, 20.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF511YWZ.bed.gz | 884.43 KB | c1bf69c6a27800731ab448a5c6825cda |
| ENCFF511YWZ.bed.gz.dvc | 100.0 B | 0097fc91ac9f25e0ffafee9f1a403b0d |
| ENCFF511YWZ.tabix.bed.gz | 808.77 KB | 1073eb2997f321210c0e4728c53187aa |
| ENCFF511YWZ.tabix.bed.gz.dvc | 106.0 B | 8b6268cdaeec03d7c1a6165f758c4296 |
| ENCFF511YWZ.tabix.bed.gz.tbi | 357.18 KB | c7cbf3d9b7fa1f23e51e0078c519e277 |
| ENCFF511YWZ.tabix.bed.gz.tbi.dvc | 110.0 B | 388c3c796af925bdda3b5d7ed95fc80a |
| genomic_resource.yaml | 2.03 KB | 2fe51ff0395fbac912294dbd13a93f26 |
| genomic_resource_original.yaml | 1.93 KB | 370ff32cab945e57ce4e3026734ae03d |
| statistics/ |