Resource

Id DNase-seq/ENCSR541UPYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR541UPY [biosample_summary="Homo sapiens thymus tissue female embryo (98 days)"]
Description
Labels
  • accession: ENCSR541UPY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002370/
  • biosample_summary: Homo sapiens thymus tissue female embryo (98 days)
  • date_created: 2015-09-16T21:43:03.007769+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR541UPY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (98 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR541UPY float

DNase-seq_ENCSR541UPY
DNase-seq ENCSR541UPY [biosample_summary="Homo sapiens thymus tissue female embryo (98 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR541UPY [0.0872, 20.7]
n
16,145,765
mean
2.05
sd
2.41

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 161457650.50% 81690
chr1 1561217 0.63% 7849
chr2 1268895 0.52% 6406
chr3 1027958 0.52% 5198
chr4 710152 0.37% 3590
chr5 795719 0.44% 4044
chr6 991068 0.58% 4920
chr7 790963 0.50% 4018
chr8 648472 0.45% 3299
chr9 651087 0.47% 3325
chr10 780515 0.58% 3978
chr11 765499 0.57% 3884
chr12 834201 0.63% 4150
chr13 405432 0.35% 2011
chr14 543513 0.51% 2731
chr15 517671 0.51% 2651
chr16 569713 0.63% 2938
chr17 797442 0.96% 4027
chr18 314168 0.39% 1595
chr19 720756 1.23% 3591
chr20 426168 0.66% 2227
chr21 195263 0.42% 985
chr22 324407 0.64% 1697
chrX 504599 0.32% 2569
chrY 887 <0.01% 7
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 81690 1 1000 197.65 188
global segment-length histogram

Files

Filename Size md5
ENCFF511YWZ.bed.gz 884.43 KB c1bf69c6a27800731ab448a5c6825cda
ENCFF511YWZ.tabix.bed.gz 808.77 KB 1073eb2997f321210c0e4728c53187aa
ENCFF511YWZ.tabix.bed.gz.tbi 357.18 KB c7cbf3d9b7fa1f23e51e0078c519e277
genomic_resource.yaml 2.03 KB 2fe51ff0395fbac912294dbd13a93f26
statistics/