DNase-seq_ENCSR541IET
DNase-seq ENCSR541IET [biosample_summary="Homo sapiens endothelial cell"]
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| Id: | DNase-seq/ENCSR541IET |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR541IET [biosample_summary="Homo sapiens endothelial cell"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (53 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF537CMG|/files/ENCFF537CMG/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF271JOQ|/files/ENCFF271JOQ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR541IET | float |
DNase-seq_ENCSR541IET |
DNase-seq ENCSR541IET [biosample_summary="Homo sapiens endothelial cell"]
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[0.0488, 22.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF669OTS.bed.gz | 886.8 KB | 0405e4e69e31ef5c9fd6daa4e3c4fbe5 |
| ENCFF669OTS.bed.gz.dvc | 100.0 B | 8ce2e9b6b397093f28188be5ac4f9785 |
| ENCFF669OTS.tabix.bed.gz | 819.92 KB | d5f61114ec3f926f1a2bbc4e93f8a9c8 |
| ENCFF669OTS.tabix.bed.gz.dvc | 106.0 B | 91969134341cf2b919652fa9ce9ccf76 |
| ENCFF669OTS.tabix.bed.gz.tbi | 343.81 KB | 49330062aec396bae31ae55e1c6be680 |
| ENCFF669OTS.tabix.bed.gz.tbi.dvc | 110.0 B | 358525143641b5435535f1be8fe853f5 |
| genomic_resource.yaml | 2.78 KB | bc1b9646c971dfbce22a35b572251e3a |
| genomic_resource_original.yaml | 2.7 KB | d0f292b37a0a10659c6079bf29bf278f |
| statistics/ |