Resource

Id DNase-seq/ENCSR539WBAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR539WBA [biosample_summary="Homo sapiens body of pancreas tissue male adult (37 years)"]
Description
Labels
  • accession: ENCSR539WBA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001150/
  • biosample_summary: Homo sapiens body of pancreas tissue male adult (37 years)
  • date_created: 2019-07-29T20:41:32.882415+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR539WBA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR539WBA float

DNase-seq_ENCSR539WBA
DNase-seq ENCSR539WBA [biosample_summary="Homo sapiens body of pancreas tissue male adult (37 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR539WBA [6, 9.84e+04]
n
17,944,353
mean
146
sd
370

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 179443530.56% 119518
chr1 1747401 0.70% 11637
chr2 1395366 0.58% 9294
chr3 1129163 0.57% 7519
chr4 797915 0.42% 5316
chr5 929637 0.51% 6189
chr6 1041022 0.61% 6934
chr7 925700 0.58% 6162
chr8 793523 0.55% 5285
chr9 778655 0.56% 5188
chr10 915407 0.68% 6100
chr11 912978 0.68% 6079
chr12 859737 0.65% 5726
chr13 430459 0.38% 2866
chr14 591136 0.55% 3937
chr15 606522 0.59% 4043
chr16 626346 0.69% 4171
chr17 840865 1.01% 5604
chr18 360444 0.45% 2402
chr19 697117 1.19% 4647
chr20 494992 0.77% 3299
chr21 215850 0.46% 1437
chr22 367482 0.72% 2444
chrX 461286 0.30% 3071
chrY 25350 0.04% 168
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 119518 40 300 150.14 150
global segment-length histogram

Files

Filename Size md5
ENCFF522EWH.bed.gz 1.15 MB 05bea558ae6c7e22ef20c57ba5b80e49
ENCFF522EWH.tabix.bed.gz 1014.82 KB cb4ea2f248667f21c06f2c48f58370f7
ENCFF522EWH.tabix.bed.gz.tbi 486.11 KB f2c7b917396988c7152eed90d28ecdb9
genomic_resource.yaml 1.4 KB 1e3787229b1af232c5ac68278888ced7
statistics/