DNase-seq_ENCSR534RXN
DNase-seq ENCSR534RXN [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell female adult (21 years)"]
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| Id: | DNase-seq/ENCSR534RXN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR534RXN [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell female adult (21 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (21 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF363YTA|/files/ENCFF363YTA/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.26. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR534RXN | float |
DNase-seq_ENCSR534RXN |
DNase-seq ENCSR534RXN [biosample_summary="Homo sapiens CD4-positive, CD25-positive, alpha-beta regulatory T cell female adult (21 years)"]
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[0.0535, 28] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF478ZBE.bed.gz | 470.14 KB | e3014546a2f76a22f3b759cef28f9312 |
| ENCFF478ZBE.bed.gz.dvc | 100.0 B | 29c0df7c36ed01b9422d1f8cbbb5d3bb |
| ENCFF478ZBE.tabix.bed.gz | 431.38 KB | b790a22f59cd64320ab225c2989e833d |
| ENCFF478ZBE.tabix.bed.gz.dvc | 106.0 B | b1fa1b85be3cf11ab6f458514308bbdf |
| ENCFF478ZBE.tabix.bed.gz.tbi | 202.85 KB | 1900fef6eba2b4552d903b9ee2f05f72 |
| ENCFF478ZBE.tabix.bed.gz.tbi.dvc | 110.0 B | b833314069b9f8da5dbace49f961c14b |
| genomic_resource.yaml | 2.15 KB | c050b9eabcc24e6c3f23a85b7b6d7a02 |
| genomic_resource_original.yaml | 2.02 KB | e9692dbcc053b29d5ec7447b470b0bce |
| statistics/ |