| Id: | DNase-seq/ENCSR534OJE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR534OJE [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF360PGB|/files/ENCFF360PGB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 28076252 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR534OJE | float |
DNase-seq_ENCSR534OJE |
DNase-seq ENCSR534OJE [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"]
|
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[0.321, 65.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF957QFW.bed.gz | 402.81 KB | 60d13a2656c064a9e1989f39aa612184 |
| ENCFF957QFW.bed.gz.dvc | 100.0 B | 838d009a15d344a1033c1e43253e4e30 |
| ENCFF957QFW.tabix.bed.gz | 363.42 KB | 242559b20e311c415789eb7ad03938f2 |
| ENCFF957QFW.tabix.bed.gz.dvc | 106.0 B | 79a507b8e1f1603dea878803edfd11c1 |
| ENCFF957QFW.tabix.bed.gz.tbi | 196.8 KB | dc0a5bad2ef4f0fb0562e0311e06cf42 |
| ENCFF957QFW.tabix.bed.gz.tbi.dvc | 110.0 B | 768d72fd981ad48b5362c73ddd0348ca |
| genomic_resource.yaml | 2.24 KB | e31f05ab204809b4f6a5542fdbfc442a |
| genomic_resource_original.yaml | 2.05 KB | 95a34bb3503631983dbc94a4eb21ff89 |
| statistics/ |