Resource

Id DNase-seq/ENCSR532DBHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR532DBH [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (86 years)"]
Description
Labels
  • accession: ENCSR532DBH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (86 years)
  • date_created: 2020-05-28T00:56:22.649371+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR532DBH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (86 years) with Cognitive impairment
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR532DBH float

DNase-seq_ENCSR532DBH
DNase-seq ENCSR532DBH [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (86 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR532DBH [0.0838, 41.2]
n
13,322,295
mean
2.28
sd
2.83

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 133222950.41% 73195
chr1 1189139 0.48% 6563
chr2 1106672 0.46% 6080
chr3 694462 0.35% 3868
chr4 474503 0.25% 2622
chr5 632370 0.35% 3554
chr6 644687 0.38% 3605
chr7 648691 0.41% 3616
chr8 585569 0.40% 3307
chr9 612695 0.44% 3364
chr10 746332 0.56% 4125
chr11 794915 0.59% 4318
chr12 565642 0.42% 3087
chr13 283308 0.25% 1582
chr14 439496 0.41% 2431
chr15 475592 0.47% 2569
chr16 480055 0.53% 2611
chr17 708724 0.85% 3855
chr18 276278 0.34% 1514
chr19 639191 1.09% 3259
chr20 430958 0.67% 2384
chr21 206907 0.44% 1139
chr22 418523 0.82% 2293
chrX 266620 0.17% 1441
chrY 966 <0.01% 8
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 73195 1 766 182.01 180
global segment-length histogram

Files

Filename Size md5
ENCFF303AWS.bed.gz 797.76 KB 054972024f84746b5b4b670bfff3efe5
ENCFF303AWS.tabix.bed.gz 725.69 KB 7daa355f80b3627ed63b712125bb3702
ENCFF303AWS.tabix.bed.gz.tbi 282.1 KB 48d90a87635905a792e253f48de13e56
genomic_resource.yaml 1.41 KB a532b86f7537e5a8c6f5280d1fd09471
statistics/