| Id: | DNase-seq/ENCSR531UVE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR531UVE [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF300YHK|/files/ENCFF300YHK/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR531UVE | float |
DNase-seq_ENCSR531UVE |
DNase-seq ENCSR531UVE [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour"]
|
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[0.154, 33.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF293GJB.bed.gz | 358.9 KB | bb4397a624f7aadd039a218ca2c4daa8 |
| ENCFF293GJB.bed.gz.dvc | 100.0 B | 37212e41b083f606fe87d9f1fc45e921 |
| ENCFF293GJB.tabix.bed.gz | 328.09 KB | 32cb9050b163f2e54254b5bc3ff43665 |
| ENCFF293GJB.tabix.bed.gz.dvc | 106.0 B | 436da351b5f9da62d6a9929431c137ff |
| ENCFF293GJB.tabix.bed.gz.tbi | 172.06 KB | 461f3ae8d69938aae71a7ec61f2cc1f6 |
| ENCFF293GJB.tabix.bed.gz.tbi.dvc | 110.0 B | 05621a379aeca2da8ca552bfec06de70 |
| genomic_resource.yaml | 2.63 KB | 877da81a495d3ee3656cd132a3ab1a01 |
| genomic_resource_original.yaml | 2.41 KB | 18e88a727cd1e9fb4ed36c88d93a1823 |
| statistics/ |