Resource

Id DNase-seq/ENCSR531HPDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR531HPD [biosample_summary="Homo sapiens large intestine tissue male embryo (105 days)"]
Description
Labels
  • accession: ENCSR531HPD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000059/
  • biosample_summary: Homo sapiens large intestine tissue male embryo (105 days)
  • date_created: 2015-09-16T21:42:19.554740+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR531HPD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (105 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR531HPD float

DNase-seq_ENCSR531HPD
DNase-seq ENCSR531HPD [biosample_summary="Homo sapiens large intestine tissue male embryo (105 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR531HPD [0.231, 16.7]
n
8,630,472
mean
2.91
sd
2.25

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 86304720.27% 47836
chr1 821016 0.33% 4539
chr2 671754 0.28% 3730
chr3 540308 0.27% 3032
chr4 427665 0.22% 2359
chr5 437488 0.24% 2456
chr6 525251 0.31% 2916
chr7 447919 0.28% 2512
chr8 374907 0.26% 2095
chr9 361900 0.26% 2022
chr10 386028 0.29% 2170
chr11 439870 0.33% 2453
chr12 449207 0.34% 2461
chr13 212111 0.19% 1163
chr14 283077 0.26% 1547
chr15 280413 0.27% 1561
chr16 294348 0.33% 1646
chr17 386177 0.46% 2090
chr18 182684 0.23% 1041
chr19 430777 0.73% 2210
chr20 221479 0.34% 1258
chr21 94338 0.20% 527
chr22 165074 0.32% 929
chrX 189029 0.12% 1080
chrY 7652 0.01% 39
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47836 1 920 180.42 178
global segment-length histogram

Files

Filename Size md5
ENCFF663QAD.bed.gz 503.07 KB e05ccebc6d1c806385bbfbef7d34e832
ENCFF663QAD.tabix.bed.gz 448.23 KB 8a51f1549fc38057154a768f4a594887
ENCFF663QAD.tabix.bed.gz.tbi 268.52 KB d5c51320b5d51a5b20af7fffc6080737
genomic_resource.yaml 1.92 KB 9e7e0d85e1c0b8096744cc8b4b05a168
statistics/