Resource

Id DNase-seq/ENCSR526TFDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR526TFD [biosample_summary="Homo sapiens CD4-positive, alpha-beta memory T cell"]
Description
Labels
  • accession: ENCSR526TFD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000897/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta memory T cell
  • date_created: 2022-02-07T22:20:21.736767+00:00
  • date_released: 2022-02-25
  • doi: 10.17989/ENCSR526TFD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR526TFD float

DNase-seq_ENCSR526TFD

DNase-seq ENCSR526TFD [biosample_summary="Homo sapiens CD4-positive, alpha-beta memory T cell"]
HISTOGRAM FOR DNase-seq_ENCSR526TFD [0.0993, 68.5]
n
13,150,608
mean
5.06
sd
7.83

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 131506080.41% 65515
chr1 1326105 0.53% 6546
chr2 959782 0.40% 4779
chr3 741159 0.37% 3724
chr4 500332 0.26% 2502
chr5 630064 0.35% 3124
chr6 816922 0.48% 4020
chr7 615701 0.39% 3103
chr8 498968 0.34% 2546
chr9 517908 0.37% 2607
chr10 619646 0.46% 3048
chr11 658624 0.49% 3338
chr12 682386 0.51% 3386
chr13 291662 0.26% 1447
chr14 464183 0.43% 2293
chr15 424100 0.42% 2132
chr16 486977 0.54% 2449
chr17 732696 0.88% 3639
chr18 234947 0.29% 1153
chr19 716076 1.22% 3473
chr20 350110 0.54% 1759
chr21 152826 0.33% 763
chr22 286550 0.56% 1449
chrX 442884 0.28% 2235
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 65515 2 1080 200.73 198
global segment-length histogram

Files

Filename Size md5
ENCFF985UCI.bed.gz 727.15 KB 8bcac6269ecb9e92c8c55f8a0529d184
ENCFF985UCI.tabix.bed.gz 667.38 KB d58d2606b63de99f5d527af1936cf24d
ENCFF985UCI.tabix.bed.gz.tbi 286.6 KB ec1e24f4b0405ad6805139b2b90ba496
genomic_resource.yaml 1.17 KB 94a9231f800d23e74d1e0a990f3e2e41
statistics/