DNase-seq_ENCSR524QPZ
DNase-seq ENCSR524QPZ [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (78 years)"]
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| Id: | DNase-seq/ENCSR524QPZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR524QPZ [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (78 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (78 years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF719OSY|/files/ENCFF719OSY/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR524QPZ | float |
DNase-seq_ENCSR524QPZ |
DNase-seq ENCSR524QPZ [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (78 years)"]
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[0.107, 21.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF256HHR.bed.gz | 468.48 KB | cbcf038d570ec4dc65d7dc9e4e141121 |
| ENCFF256HHR.bed.gz.dvc | 100.0 B | 209cee10febe99a2f0a47348483b5fba |
| ENCFF256HHR.tabix.bed.gz | 428.77 KB | 8ae1bb7a6ca8f897048766ccb44a6429 |
| ENCFF256HHR.tabix.bed.gz.dvc | 106.0 B | 89cf96654d18d537fcf91fb73eca101b |
| ENCFF256HHR.tabix.bed.gz.tbi | 216.01 KB | 031163e51c7afa9fa5003c420a646d8d |
| ENCFF256HHR.tabix.bed.gz.tbi.dvc | 110.0 B | 4a750b70e9599608008b502925efd0a3 |
| genomic_resource.yaml | 2.23 KB | 772386974bedc2271c854d2855d76b82 |
| genomic_resource_original.yaml | 2.08 KB | 6599a68989f764ff1ca7d1b8304d95f0 |
| statistics/ |