DNase-seq_ENCSR524QBS
DNase-seq ENCSR524QBS [biosample_summary="Homo sapiens cardiac septum tissue female adult (41 years)"]
×
| Id: | DNase-seq/ENCSR524QBS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR524QBS [biosample_summary="Homo sapiens cardiac septum tissue female adult (41 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (41 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF478AUS|/files/ENCFF478AUS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR524QBS | float |
DNase-seq_ENCSR524QBS |
DNase-seq ENCSR524QBS [biosample_summary="Homo sapiens cardiac septum tissue female adult (41 years)"]
|
|
[0.035, 13.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF825VZG.bed.gz | 1.6 MB | 41f8e2b6e86b616a2dea2a6c4950e316 |
| ENCFF825VZG.bed.gz.dvc | 101.0 B | aa00cab003fdbf70a30313d4ade223ae |
| ENCFF825VZG.tabix.bed.gz | 1.49 MB | d0011651b6885f922bf36ed0e619224c |
| ENCFF825VZG.tabix.bed.gz.dvc | 107.0 B | 8c752401a90244c01855c039200ce041 |
| ENCFF825VZG.tabix.bed.gz.tbi | 259.4 KB | bba6282d530c8b7538737131be0f83c0 |
| ENCFF825VZG.tabix.bed.gz.tbi.dvc | 110.0 B | e0ea065a338bf38d9ebd82d9641cbd2e |
| genomic_resource.yaml | 2.05 KB | 2db205fae39142b775a806d021f37113 |
| genomic_resource_original.yaml | 1.95 KB | 44a2a361482ca91580c8d3740ea52adb |
| statistics/ |