DNase-seq_ENCSR520WTV
DNase-seq ENCSR520WTV [biosample_summary="Homo sapiens SJSA1"]
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| Id: | DNase-seq/ENCSR520WTV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR520WTV [biosample_summary="Homo sapiens SJSA1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF177HIF|/files/ENCFF177HIF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR520WTV | float |
DNase-seq_ENCSR520WTV |
DNase-seq ENCSR520WTV [biosample_summary="Homo sapiens SJSA1"]
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[0.0287, 215] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF317YIX.bed.gz | 1.5 MB | 1980d41992b28a5faeb42ae408db0f14 |
| ENCFF317YIX.bed.gz.dvc | 101.0 B | af08e35b04159b3bf55cfff5846673ec |
| ENCFF317YIX.tabix.bed.gz | 1.4 MB | 236c597af17d9698aac8c82c712535ab |
| ENCFF317YIX.tabix.bed.gz.dvc | 107.0 B | 9279402b650533a2c4cb254c686b0d71 |
| ENCFF317YIX.tabix.bed.gz.tbi | 349.96 KB | b4d668b4e63feb4a9651ef1261ad4655 |
| ENCFF317YIX.tabix.bed.gz.tbi.dvc | 110.0 B | 85366b8ce2cc2d43957992134ff6f264 |
| genomic_resource.yaml | 1.91 KB | 7bfe4c1d60e622201788dfcb3b97f1ab |
| genomic_resource_original.yaml | 1.84 KB | 0f2db6d69d126253f484e368994d987b |
| statistics/ |