DNase-seq_ENCSR518WRP
DNase-seq ENCSR518WRP [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (78 years)"]
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| Id: | DNase-seq/ENCSR518WRP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR518WRP [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (78 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (78 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF175CMR|/files/ENCFF175CMR/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR518WRP | float |
DNase-seq_ENCSR518WRP |
DNase-seq ENCSR518WRP [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (78 years)"]
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[0.063, 15.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF421GQV.bed.gz | 1003.23 KB | 884a869f7622c8b7c16a3335721272c1 |
| ENCFF421GQV.bed.gz.dvc | 101.0 B | 9a8a883fc1985bfb27ab52c5cca5562e |
| ENCFF421GQV.tabix.bed.gz | 923.61 KB | 910da81249ace4143b75dd7bced8c396 |
| ENCFF421GQV.tabix.bed.gz.dvc | 106.0 B | c48c0a1604828a09a6c3df9a725ec03a |
| ENCFF421GQV.tabix.bed.gz.tbi | 282.97 KB | a4d1960489d1de629d59026f31eae3dc |
| ENCFF421GQV.tabix.bed.gz.tbi.dvc | 110.0 B | f3fe81297412873fb16d0a3224128949 |
| genomic_resource.yaml | 2.1 KB | dfd1a7425b58372348875be2bf3c9e1b |
| genomic_resource_original.yaml | 1.98 KB | 9e68e6e94c2d24a528e8f9d547cce9ec |
| statistics/ |