Resource
| Id | DNase-seq/ENCSR518WRP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR518WRP [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (78 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (78 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF175CMR|/files/ENCFF175CMR/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR518WRP | float |
DNase-seq_ENCSR518WRP |
DNase-seq ENCSR518WRP [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (78 years)"]
|
 |
[0.063, 15.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 18543494 | 0.58% | 95492 |
| chr1 | 1670133 | 0.67% | 8679 |
| chr2 | 1560694 | 0.64% | 8109 |
| chr3 | 940414 | 0.47% | 4855 |
| chr4 | 643440 | 0.34% | 3265 |
| chr5 | 876407 | 0.48% | 4529 |
| chr6 | 769206 | 0.45% | 4004 |
| chr7 | 951477 | 0.60% | 4941 |
| chr8 | 884444 | 0.61% | 4488 |
| chr9 | 817144 | 0.59% | 4166 |
| chr10 | 1074975 | 0.80% | 5483 |
| chr11 | 1094673 | 0.81% | 5571 |
| chr12 | 739918 | 0.56% | 3853 |
| chr13 | 336500 | 0.29% | 1718 |
| chr14 | 664276 | 0.62% | 3348 |
| chr15 | 679810 | 0.67% | 3536 |
| chr16 | 694662 | 0.77% | 3644 |
| chr17 | 1032085 | 1.24% | 5275 |
| chr18 | 331466 | 0.41% | 1720 |
| chr19 | 843222 | 1.44% | 4232 |
| chr20 | 558694 | 0.87% | 2973 |
| chr21 | 261297 | 0.56% | 1336 |
| chr22 | 749278 | 1.47% | 3829 |
| chrX | 367775 | 0.24% | 1926 |
| chrY | 1504 | <0.01% | 12 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 95492 | 1 | 1000 | 194.19 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF421GQV.bed.gz | 1003.23 KB | 884a869f7622c8b7c16a3335721272c1 |
| ENCFF421GQV.tabix.bed.gz | 923.61 KB | 910da81249ace4143b75dd7bced8c396 |
| ENCFF421GQV.tabix.bed.gz.tbi | 282.97 KB | a4d1960489d1de629d59026f31eae3dc |
| genomic_resource.yaml | 2.1 KB | dfd1a7425b58372348875be2bf3c9e1b |
| statistics/ |