Resource

Id DNase-seq/ENCSR518JGYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR518JGY [biosample_summary="Homo sapiens foreskin melanocyte male newborn"]
Description
Labels
  • accession: ENCSR518JGY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_2000045/
  • biosample_summary: Homo sapiens foreskin melanocyte male newborn
  • date_created: 2015-09-16T21:42:15.046710+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR518JGY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR518JGY float

DNase-seq_ENCSR518JGY
DNase-seq ENCSR518JGY [biosample_summary="Homo sapiens foreskin melanocyte male newborn"]
 HISTOGRAM FOR DNase-seq_ENCSR518JGY [5, 3.37e+03]
n
23,540,658
mean
83.4
sd
102

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 235406580.73% 156723
chr1 2108376 0.85% 14046
chr2 1986750 0.82% 13230
chr3 1627467 0.82% 10833
chr4 1412983 0.74% 9408
chr5 1397841 0.77% 9301
chr6 1500725 0.88% 9993
chr7 1241067 0.78% 8262
chr8 1114419 0.77% 7418
chr9 959835 0.69% 6390
chr10 1103830 0.83% 7351
chr11 1140986 0.84% 7593
chr12 1199870 0.90% 7987
chr13 731419 0.64% 4864
chr14 718500 0.67% 4785
chr15 749850 0.74% 4993
chr16 663092 0.73% 4416
chr17 811499 0.97% 5405
chr18 543750 0.68% 3623
chr19 592200 1.01% 3943
chr20 542550 0.84% 3611
chr21 272550 0.58% 1812
chr22 337804 0.66% 2249
chrX 742345 0.48% 4937
chrY 40950 0.07% 273
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 156723 40 437 150.21 150
global segment-length histogram

Files

Filename Size md5
ENCFF331ODX.bed.gz 1.48 MB 37b6e71344103e22eaeab7b7e3044c0e
ENCFF331ODX.tabix.bed.gz 1.28 MB e200163081f498a8dc395535fa8e3640
ENCFF331ODX.tabix.bed.gz.tbi 642.75 KB 8b0e4ee7a35b8d5eb7ac18026fab318d
genomic_resource.yaml 1.35 KB 64dd66923e12fd771aeaeb254ce9ed7c
statistics/