DNase-seq_ENCSR516RTV
DNase-seq ENCSR516RTV [biosample_summary="Homo sapiens with Cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR516RTV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR516RTV [biosample_summary="Homo sapiens with Cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF196CBF|/files/ENCFF196CBF/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR516RTV | float |
DNase-seq_ENCSR516RTV |
DNase-seq ENCSR516RTV [biosample_summary="Homo sapiens with Cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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[0.0654, 20] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF221IWR.bed.gz | 925.43 KB | b9bf773947c30606ae09166a21a84f20 |
| ENCFF221IWR.bed.gz.dvc | 100.0 B | b2d51055bda6f5d2f57a90102df4ee14 |
| ENCFF221IWR.tabix.bed.gz | 852.71 KB | a86fc613c9b3f699260c74b4d6ae27ab |
| ENCFF221IWR.tabix.bed.gz.dvc | 106.0 B | e411aab1234bae35dff9a3ba954fb70d |
| ENCFF221IWR.tabix.bed.gz.tbi | 286.34 KB | 681fe2c1b715924cce1a241691d56a61 |
| ENCFF221IWR.tabix.bed.gz.tbi.dvc | 110.0 B | 54fc69013ce705e542c29d3bf9245fbe |
| genomic_resource.yaml | 2.25 KB | 8b8ba96f74db9f058797ec92a186e8fe |
| genomic_resource_original.yaml | 2.1 KB | 107ee20fcadb0adeef202ae4ecc6eb31 |
| statistics/ |